Accurate targeted long-read DNA methylation and hydroxymethylation sequencing with TAPS

Liu Y., Cheng J., Siejka-Zielińska P., Weldon C., Roberts H., Lopopolo M., Magri A., D’Arienzo V., Harris JM., McKeating JA., Song C-X.

AbstractWe present long-read Tet-assisted pyridine borane sequencing (lrTAPS) for targeted base-resolution sequencing of DNA methylation and hydroxymethylation in regions up to 10 kb from nanogram-level input. Compatible with both Oxford Nanopore and PacBio Single-Molecule Real-Time (SMRT) sequencing, lrTAPS detects methylation with accuracy comparable to short-read Illumina sequencing but with long-range epigenetic phasing. We applied lrTAPS to sequence difficult-to-map regions in mouse embryonic stem cells and to identify distinct methylation events in the integrated hepatitis B virus genome.

DOI

10.1186/s13059-020-01969-6

Type

Journal article

Journal

Genome Biology

Publisher

Springer Science and Business Media LLC

Publication Date

12/2020

Volume

21

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