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Publications

DMRT1 regulates human germline commitment.

Irie N. et al, (2023), Nature cell biology

Mapping epigenetic modifications by sequencing technologies.

Chen X. et al, (2023), Cell death and differentiation

Modular Oxidation of Cytosine Modifications and Their Application in Direct and Quantitative Sequencing of 5-Hydroxymethylcytosine.

Xu H. et al, (2023), Journal of the American Chemical Society, 145, 7095 - 7100

TAPS: The Development of a Direct and Base-Resolution Sequencing Method for DNA Methylation

Liu Y. and Song C-X., (2022), ACS Chemical Biology

Subtraction-free and bisulfite-free specific sequencing of 5-methylcytosine and its oxidized derivatives at base resolution

Liu Y. et al, (2021), Nature Communications, 12

Cell-free DNA TAPS provides multimodal information for early cancer detection.

Siejka-Zielińska P. et al, (2021), Science advances, 7

Endonuclease enrichment TAPS for cost-effective genome-wide base-resolution DNA methylation detection.

Cheng J. et al, (2021), Nucleic acids research, 49

Accurate targeted long-read DNA methylation and hydroxymethylation sequencing with TAPS

Liu Y. et al, (2020), Genome Biology, 21

Mapping the epigenetic modifications of DNA and RNA.

Zhao L-Y. et al, (2020), Protein & cell, 11, 792 - 808

Homoharringtonine exhibits potent anti-tumor effect and modulates DNA epigenome in acute myeloid leukemia by targeting SP1/TET1/5hmC.

Li C. et al, (2020), Haematologica, 105, 148 - 160

5-Carboxylcytosine is resistant towards phosphodiesterase I digestion: implications for epigenetic modification quantification by mass spectrometry

Yuan F. et al, (2019), RSC ADVANCES, 9, 29010 - 29014

Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution.

Liu Y. et al, (2019), Nature biotechnology, 37, 424 - 429

Bisulfite-free and base-resolution analysis of 5-methylcytidine and 5-hydroxymethylcytidine in RNA with peroxotungstate

Yuan F. et al, (2019), Chemical Communications, 55, 2328 - 2331

Glucose and glutamine availability regulate HepG2 transcriptional responses to low oxygen

Lai AG. et al, (2018), Wellcome Open Research, 3, 126 - 126

Simultaneously Monitoring Immune Response and Microbial Infections during Pregnancy through Plasma cfRNA Sequencing

Pan W. et al, (2017), Clinical Chemistry, 63, 1695 - 1704

5-Hydroxymethylcytosine signatures in cell-free DNA provide information about tumor types and stages

Song C-X. et al, (2017), Cell Research, 27, 1231 - 1242

Quantitation and mapping of the epigenetic marker 5-hydroxymethylcytosine

Qing Y. et al, (2017), BioEssays, 39, 1700010 - 1700010

FOXA1 potentiates lineage-specific enhancer activation through modulating TET1 expression and function

Yang YA. et al, (2016), Nucleic Acids Research, 44, 8153 - 8164

Simultaneous single-molecule epigenetic imaging of DNA methylation and hydroxymethylation

Song C-X. et al, (2016), Proceedings of the National Academy of Sciences, 113, 4338 - 4343

Identification of MLL-fusion/MYC⊣miR-26⊣TET1 signaling circuit in MLL-rearranged leukemia

Huang H. et al, (2016), Cancer Letters, 372, 157 - 165

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